iGeneTech Bioscience Co., Ltd.
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Animal Whole Exome Panel

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Overview
Advantages
Applications
Applicable Species
Performance
Ordering Info
References
Resources

Overview

iGeneTech® owns the independently developed TargetSeq® hybridization capture sequencing technology and IGT® Oligo Pools synthesis platform, which enable the design of products targeting exon regions and offering comprehensive solutions for whole-exome sequencing across various species. As of now, we have successfully developed panels for the whole exomes of mice, rats, dogs, pigs, cattle, sheep, chickens, and more all of which demonstrate excellent capture efficiency and uniformity metrics. More products are currently under active development.


Advantages

Synthesis Advantages:

Backed by our self-developed large-scale array based oligo pool synthesis platform, we can rapidly generate millions of oligo pools in less than 48 hours, and have helped our customs creat ready-to-use breeding chips for hundreds of species. More over, we have launched " Capture All" projects, which help scientists to develop over one hundred species of whole exome chip.

Superior Data Performance:

 Combined with the TargetSeqOne® capture system, we efficiently achieving excellent performance in on target rate, and uniformity.

Flexible Customization:

We offer customized whole exomes for various species or tailored breeding chips as needed, providing comprehensive solutions that include extraction, library preparation, capture kits, and automated equipment.

Collaborative Development:

We adopt flexible collaboration models, enabling joint development of whole-exome products for different species with shared intellectual property rights or usage rights for the panels.


Applications

Molecular Breeding:
Using exome capture for screening molecular genetic markers and advantageous traits [1].

 

Population Genetics Analysis:
Conducting large-scale natural population sequencing via exome capture to identify genetic variations associated with target traits [2] and study gene introgression [3].

 

Mutant Library Sequencing:
Sequencing mutant materials through exome capture to generate large sequence variation libraries for gene function studies [4].

 

BSA Fine Mapping:
Performing BSA (Bulked Segregant Analysis) on segregating populations based on exome capture sequencing to rapidly map functional genes.


Applicable Species

Applicable_Species.png

Performance

Excellent Performance in Different Species

Mouse Whole Exome Panel

As one of the most commonly used model organisms in biology and medicine, mice are highly adaptable and widely used in disease model research, drug development, etc. The exon region of mice is approximately 38.4 Mb. When tested with mouse gDNA and sequenced on the MGI platform, the capture efficiency is over 75%, the 20%× uniformity is over 98%, and a sequencing depth of over 100× can be achieved with 8 Gb of data, showing excellent performance indicators.

 

Mouse_Whole_Exome_Panel_01.png


Dog Whole Exome Panel

In the field of pet health, precision detection technologies are constantly evolving. The dog whole exome product can leverage cutting - edge high - throughput sequencing technology to provide strong support for canine health research and disease prevention and control. The Dog Whole Exome Panel is designed based on the latest canine reference genome canFam4. The exon region is approximately 36.0 Mb. When tested with canine gDNA and sequenced on the MGI platform, the capture efficiency is over 70%, the 20%× uniformity is over 95%, and a sequencing depth of over 110× can be achieved with 8 Gb of data, demonstrating excellent performance indicators.


Excellent Performance in Different Species

Ordering Info


Product NameReference GenomeCoverage SizeSetCat. No
Mouse Whole Exome Panelmm3938.4 Mb24 rxnPH2002985
96 rxnPH2002982
Rat Whole Exome PanelGRCr838.3 Mb24 rxnPH2003485
96 rxnPH2003482
Dog Whole Exome PanelcanFam436.0 Mb24 rxnPH2002995
96 rxnPH2002992
Pig Whole Exome PanelSscrofa11.135.8 Mb24 rxnPH2003635
96 rxnPH2003632
Domestic Cattle Whole Exome PanelARS-UCD2.036.9 Mb24 rxnPH2004455
96 rxnPH2004452
Chicken Whole Exome PanelGRCg7b32.1 Mb24 rxnPH2004445
96 rxnPH2004442
Sheep Whole Exome PanelARS-UI_Ramb_v3.036.9 Mb24 rxnPH2004655
96 rxnPH2004652




References

1.Li A, Hao C, Wang Z, et al. Wheat breeding history reveals synergistic selection of pleiotropic genomic sites for plant architecture and grain yield[J].

Molecular Plant, 2022, 15(3): 504-519.

2.Pont C, Leroy T, et al. Tracing the ancestry of modern bread wheats[J]. Nature genetics, 2019, 51(5): 905-911.

3.He F, Pasam R, et al. Exome sequencing highlights the role of wild-relative introgression in shaping the adaptive landscape of the wheat genome[J].

Nature genetics, 2019, 51(5): 896-904.

4.Krasileva K V, Vasquez-Gross H A, et al. Uncovering hidden variation in polyploid wheat[J]. Proceedings of the National Academy of Sciences, 2017,

114(6): E913-E921.


Resources

bed File
  • Mouse Whole Exome Panel bed file
    Mouse Whole Exome Panel bed file
  • Rat Whole Exome Panel bed file
    Rat Whole Exome Panel bed file
  • Dog Whole Exome Panel bed file
    Dog Whole Exome Panel bed file
Demo DataSet
  • Mouse Whole Exome Panel demo data
    Mouse Whole Exome Panel demo data
  • Dog Whole Exome Panel demo data
    Dog Whole Exome Panel demo data
  • Pig Whole Exome Panel demo data
    Pig Whole Exome Panel demo data